exRNAdisease

Entry Detail

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General Information

Database ID: exR0373629 RNA Name: ADAMTS13 RNA Type: mRNA Chromosome: chr9 Starnd: + Coordinate: Start Site(bp): 133414358 End Site(bp): 133459402 External Links: ENSG00000160323

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ATXN10 chr22 45671798 45845307 + BCR chr22 23179704 23318037 + CCDC124 chr19 17933015 17943991 + DDX24 chr14 94048287 94081212 - EME2 chr16 1772810 1781708 + ESYT1 chr12 56118250 56144671 + GCN1 chr12 120127202 120194715 - GDI2 chr10 5765223 5842132 - GNS chr12 64713445 64759431 - LUC7L chr16 188969 229463 - MAPK9 chr5 180233143 180292099 - MARCKSL1 chr1 32333839 32336233 - NDUFV1 chr11 67605653 67612554 + PDXK chr21 43719094 43762307 + PLEKHJ1 chr19 2230084 2237704 - PPP2R1A chr19 52190048 52229518 + PTOV1 chr19 49850735 49860744 + PTPN11 chr12 112418351 112509913 + SPG11 chr15 44562696 44663678 - SPG7 chr16 89490719 89557768 + SUV39H1 chrX 48695554 48709012 + WDR34 chr9 128633661 128656787 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC121761.1 chr12 75483454 75489820 - AC124068.2 chr15 89335053 89336161 + Z95331.1 chr22 45657019 45680130 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA