exRNAdisease

Entry Detail

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General Information

Database ID: exR0373831 RNA Name: AKNA RNA Type: mRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 114334156 End Site(bp): 114394405 External Links: ENSG00000106948

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand TNFAIP3 chr6 137867214 137883312 + RASGRP3 chr2 33436324 33564750 + SSR4 chrX 153793516 153798499 + RPS9 chr19 54200809 54249003 + RPS19 chr19 41860255 41872925 + ATP6V1D chr14 67294371 67360265 - UBALD2 chr17 76265348 76271298 + NDUFS4 chr5 53560633 53683338 + BRMS1 chr11 66337333 66345125 - ETFB chr19 51345169 51366418 - SKP1 chr5 134148935 134177038 - RPL11 chr1 23691742 23696835 + ABCC5 chr3 183919934 184017939 - MLST8 chr16 2204248 2209453 + RPL13 chr16 89560657 89566828 + PGRMC2 chr4 128269237 128288829 - HIKESHI chr11 86302211 86345943 + EIF4B chr12 53006158 53042209 + ERI2 chr16 20780193 20900349 - BUB3 chr10 123154402 123170467 + SHC1 chr1 154962298 154974395 - GLRX3 chr10 130136391 130184521 + HLA-DRB1 chr6 32578769 32589848 - FKBP8 chr19 18531751 18544077 - ALAS1 chr3 52198086 52214327 + TUBB chr6 30720352 30725426 + ATPAF1 chr1 46632737 46673867 - HNRNPA2B1 chr7 26173057 26201529 - PYGO2 chr1 154957026 154963853 - COX7A2L chr2 42333546 42425088 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL138895.1 chr9 114396724 114398503 - LINC00882 chr3 106449775 107240671 - MIR663AHG chr20 26167817 26251546 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA