exRNAdisease

Entry Detail

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General Information

Database ID: exR0375323 RNA Name: CALM1 RNA Type: mRNA Chromosome: chr14 Starnd: + Coordinate: Start Site(bp): 90396502 End Site(bp): 90408268 External Links: ENSG00000198668

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF2 chr7 151207837 151227166 - AC008758.1 chr19 12461559 12551474 - AC010422.3 chr19 12643831 12648397 - ACACB chr12 109116595 109268226 + ACTB chr7 5527148 5563784 - ACTL6A chr3 179562886 179588407 + ACTR2 chr2 65227753 65271253 + ADCY6 chr12 48766194 48789037 - ADNP chr20 50888916 50931437 - AFG3L2 chr18 12328944 12377227 - AGO1 chr1 35869808 35930532 + AGPAT1 chr6 32168212 32178096 - AHCY chr20 34280268 34311802 - AKAP12 chr6 151239967 151358559 + AL117348.2 chr1 225886696 225924278 - AL136531.2 chr20 1317571 1393096 - AL365205.1 chr6 41780349 41790141 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-206 chr6 52144401 52144422 + hsa-miR-432-5p chr14 100884496 100884518 + hsa-miR-660-5p chrX 50013256 50013277 + hsa-miR-362-3p chrX 50009005 50009026 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004812.2 chr12 120116907 120119000 + AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA