exRNAdisease

Entry Detail

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General Information

Database ID: exR0375360 RNA Name: CAP1 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 40040233 End Site(bp): 40072649 External Links: ENSG00000131236

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD8 chr19 17292131 17310236 - AC009133.6 chr16 29812261 29820092 + AC093668.1 chr7 102541501 102592444 - ACAT2 chr6 159762045 159779112 + ACIN1 chr14 23058564 23095614 - ACTA1 chr1 229431245 229434098 - ACTR3 chr2 113890063 113962596 + AIF1L chr9 131096476 131123152 + AL133352.1 chr10 100505628 100529881 - AL136454.1 chr1 192716132 192716653 + AL358113.1 chr9 69035747 69255187 + ALDH18A1 chr10 95605941 95656711 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC016026.1 chr22 17787652 17811497 - AC021504.1 chr18 41465783 41632185 - AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA