exRNAdisease

Entry Detail

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General Information

Database ID: exR0375363 RNA Name: CAPN1 RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 65180566 End Site(bp): 65212006 External Links: ENSG00000014216

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008750.8 chr19 51350373 51368099 - AC012254.2 chr18 47108188 47176345 - AC027796.3 chr17 3585149 3636249 - AC092143.1 chr16 89919165 89936092 + AC093525.2 chr16 2496032 2520218 + ACAA2 chr18 49782164 49813953 - ACLY chr17 41866917 41930542 - ACTB chr7 5527148 5563784 - ADRM1 chr20 62302093 62308862 + AGA chr4 177430774 177442437 - AKAP13 chr15 85380571 85749358 + AKT1S1 chr19 49869033 49878459 - AL133352.1 chr10 100505628 100529881 - AL136295.5 chr14 24147548 24166452 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-423-5p chr17 30117095 30117117 + hsa-miR-4444 chr2 177212768 177212785 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA