exRNAdisease

Entry Detail

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General Information

Database ID: exR0375377 RNA Name: CAPNS1 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 36139953 End Site(bp): 36150353 External Links: ENSG00000126247

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCG2 chr4 88090150 88231628 - AC007192.1 chr19 18153158 18178117 + AC009690.1 chr15 72284727 72375981 - AC010422.3 chr19 12643831 12648397 - AC093525.1 chr16 2513965 2527955 + AC099811.2 chr17 42119674 42154916 - ACAP1 chr17 7336529 7351477 + ACBD6 chr1 180269653 180502954 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACYP2 chr2 53970838 54305300 + ADAM9 chr8 38996869 39105261 + AKAP8L chr19 15380050 15419141 - AKR1A1 chr1 45550543 45570049 + AL117348.2 chr1 225886696 225924278 - AL136454.1 chr1 192716132 192716653 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-99a-5p chr21 16539101 16539122 + hsa-miR-100-5p chr11 122152275 122152296 - hsa-miR-147a chr9 120244985 120245004 - hsa-miR-206 chr6 52144401 52144422 + hsa-miR-99b-5p chr19 51692618 51692639 + hsa-miR-769-5p chr19 46018961 46018982 + hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA