exRNAdisease

Entry Detail

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General Information

Database ID: exR0375451 RNA Name: CBS RNA Type: mRNA Chromosome: chr21 Starnd: - Coordinate: Start Site(bp): 43053191 End Site(bp): 43076943 External Links: ENSG00000160200

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD16A chr6 31686955 31703356 - ABHD4 chr14 22598237 22613215 + ABHD5 chr3 43690108 43734371 + AC010323.1 chr19 8308283 8321379 - AC010422.5 chr19 12664828 12669397 - AC135050.2 chr16 31083439 31094956 - AC138811.2 chr16 18788063 18801519 - AC139530.2 chr17 81703371 81720539 + AC245033.1 chr15 82536788 82573194 - ACKR3 chr2 236567787 236582354 + ACTA1 chr1 229431245 229434098 - ACTG1 chr17 81509971 81523847 - ACTR1A chr10 102461881 102502712 - ACTR3 chr2 113890063 113962596 + ADRM1 chr20 62302093 62308862 + AGBL5 chr2 27042364 27070622 + AKAP1 chr17 57085092 57121346 + AKR1A1 chr1 45550543 45570049 + AL132780.3 chr14 22946270 22982258 - AL162417.1 chr9 133098121 133163914 - ALDH9A1 chr1 165662216 165698863 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-6853-3p chr9 35732974 35732995 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004951.4 chr7 43951910 44019151 - AC026461.1 chr16 56682470 56687807 + AC069281.2 chr7 100572232 100578700 - AC074044.1 chr3 112990447 112991153 - AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + AL049796.1 chr1 93847174 93848939 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA