exRNAdisease

Entry Detail

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General Information

Database ID: exR0375459 RNA Name: CBX3 RNA Type: mRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 26201162 End Site(bp): 26213607 External Links: ENSG00000122565

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD17C chr15 80679684 80755621 + AC004922.1 chr7 99325879 99394653 + AC012254.2 chr18 47108188 47176345 - AC068547.1 chr2 151802651 151973949 - ACAD10 chr12 111686056 111757107 + ACTB chr7 5527148 5563784 - AD000671.2 chr19 35739252 35745432 - ADAR chr1 154582057 154628013 - ADCY1 chr7 45574140 45723116 + ADGRG2 chrX 18989307 19122637 - ADGRL2 chr1 81306160 81992436 + ADM chr11 10305073 10307397 + ADSL chr22 40346500 40390463 + AK4 chr1 65147549 65232145 + AKAP1 chr17 57085092 57121346 + AKAP9 chr7 91940867 92110673 + AKIP1 chr11 8911139 8920084 + AL021546.1 chr12 120438198 120460006 + AL022238.4 chr22 40346529 40410054 + AL139300.1 chr14 103562962 103685924 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-629-5p chr15 70079427 70079447 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC011476.3 chr19 55006193 55048086 + AC016876.2 chr17 7581964 7584086 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA