exRNAdisease

Entry Detail

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General Information

Database ID: exR0375683 RNA Name: CCT5 RNA Type: mRNA Chromosome: chr5 Starnd: + Coordinate: Start Site(bp): 10249929 End Site(bp): 10266389 External Links: ENSG00000150753

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010422.5 chr19 12664828 12669397 - AC010463.1 chr19 17267418 17282966 + AC091167.2 chr15 90249556 90272208 + AC137834.1 chr12 57249609 57296484 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAM17 chr2 9488486 9556732 - ADD2 chr2 70607618 70768225 - ADGRL2 chr1 81306160 81992436 + ADH5 chr4 99070978 99088801 - ADNP chr20 50888916 50931437 - AGPAT1 chr6 32168212 32178096 - AGRN chr1 1020120 1056118 + AHCYL1 chr1 109984765 110023742 + AIF1L chr9 131096476 131123152 + AKIRIN1 chr1 38991276 39006059 + AKT1S1 chr19 49869033 49878459 - AL121594.1 chr14 35122549 35317474 + AL133352.1 chr10 100505628 100529881 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-302c-3p chr4 112648366 112648388 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008649.1 chr19 38596346 38601694 + AC009831.1 chr18 31942575 31944156 + AC069281.2 chr7 100572232 100578700 - AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA