exRNAdisease

Entry Detail

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General Information

Database ID: exR0375743 RNA Name: CD44 RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 35138870 End Site(bp): 35232402 External Links: ENSG00000026508

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC068547.1 chr2 151802651 151973949 - ACADM chr1 75724347 75787575 + ACLY chr17 41866917 41930542 - ACTB chr7 5527148 5563784 - ACTN4 chr19 38647649 38731589 + ADCY1 chr7 45574140 45723116 + AHCY chr20 34280268 34311802 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3654 chr7 133034860 133034878 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC011476.2 chr19 55027593 55053928 - AC016876.2 chr17 7581964 7584086 - AC023509.1 chr12 53441741 53467528 + AC078846.1 chr7 129604548 129611630 - AC104170.1 chr1 51461721 51463416 + AD000090.1 chr19 35557956 35581954 + AL078612.2 chr11 32097143 32105091 - AL137230.2 chr14 89628921 89642671 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA