exRNAdisease

Entry Detail

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General Information

Database ID: exR0375761 RNA Name: CD74 RNA Type: mRNA Chromosome: chr5 Starnd: - Coordinate: Start Site(bp): 150400041 End Site(bp): 150412929 External Links: ENSG00000019582

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AKT1 chr14 104769349 104795751 - A4GALT chr22 42692121 42721298 - ACTN4 chr19 38647649 38731589 + AHCY chr20 34280268 34311802 - ACTG1 chr17 81509971 81523847 - AATF chr17 36948954 37056871 + AC006064.6 chr12 6556886 6607367 - AC005258.1 chr19 2269525 2341172 + AHCYL1 chr1 109984765 110023742 + AC023055.1 chr12 55757275 55827546 - AKAP8 chr19 15353385 15379798 - ALDOA chr16 30064164 30070457 + ACTR3 chr2 113890063 113962596 + ACTR2 chr2 65227753 65271253 + AL049629.2 chr11 33698261 33722467 - ACOT9 chrX 23701055 23766475 - AK3 chr9 4709556 4742043 - ACAP1 chr17 7336529 7351477 + AC008982.1 chr19 38817471 38840178 - ADGRE1 chr19 6887566 6940459 + AL669918.1 chr6 32813767 32838822 - AC007192.1 chr19 18153158 18178117 + ACTB chr7 5527148 5563784 - AL590764.2 chrX 71103987 71111575 - AKR1B1 chr7 134442356 134459284 - ALDH18A1 chr10 95605941 95656711 - AC005670.2 chr17 46923133 47049932 + AIP chr11 67483026 67491103 + AKR7A2 chr1 19303965 19312146 - ACIN1 chr14 23058564 23095614 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-24-3p chr9 95086064 95086085 + hsa-miR-7-5p chr19 4770700 4770723 + hsa-miR-423-5p chr17 30117095 30117117 + hsa-miR-4687-3p chr11 3856113 3856133 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC007952.4 chr17 19112000 19112636 - AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AL137802.2 chr1 16514645 16515754 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA