exRNAdisease

Entry Detail

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General Information

Database ID: exR0388950 RNA Name: TUBA1C RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 49188736 End Site(bp): 49274603 External Links: ENSG00000167553

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ADCK2 chr7 140672945 140696261 + AHCYL1 chr1 109984765 110023742 + ALDH7A1 chr5 126531200 126595362 - AC010323.1 chr19 8308283 8321379 - AL139011.2 chr1 160216800 160285130 - ADNP2 chr18 80109262 80147523 + ABR chr17 1003518 1229738 - ABCA2 chr9 137007234 137028922 - ACBD5 chr10 27195214 27242130 - AC027644.4 chr7 66628958 66811189 + AC093525.2 chr16 2496032 2520218 + ACAT2 chr6 159762045 159779112 + AK9 chr6 109492856 109691217 - ADORA1 chr1 203090654 203167405 + AHCY chr20 34280268 34311802 - ACTB chr7 5527148 5563784 - AGTRAP chr1 11736084 11754802 + ACIN1 chr14 23058564 23095614 - ACTR3 chr2 113890063 113962596 + AGBL3 chr7 134986508 135147963 + ACTG1 chr17 81509971 81523847 - AGK chr7 141551278 141655244 + ACTL6A chr3 179562886 179588407 + AC008982.1 chr19 38817471 38840178 - AL162231.3 chr9 34646645 34657113 + ALDOA chr16 30064164 30070457 + AL136454.1 chr1 192716132 192716653 + AC004922.1 chr7 99325879 99394653 + AC092143.1 chr16 89919165 89936092 + ACTR1B chr2 97655939 97664044 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-367-3p chr4 112647877 112647898 - hsa-miR-3610 chr8 116874740 116874759 - hsa-miR-3654 chr7 133034860 133034878 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC011298.1 chr2 240686334 240690414 + AC026362.1 chr12 122975320 122982907 + AC233266.2 chr2 91580336 91580863 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA