exRNAdisease

Entry Detail

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General Information

Database ID: exR0388963 RNA Name: TUBB4B RNA Type: mRNA Chromosome: chr9 Starnd: + Coordinate: Start Site(bp): 137241287 End Site(bp): 137243707 External Links: ENSG00000188229

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD5 chr3 43690108 43734371 + ABLIM1 chr10 114431113 114768061 - AC004922.1 chr7 99325879 99394653 + AC008764.1 chr19 16479067 16628204 - AC011511.4 chr19 10315471 10320678 - AC068533.4 chr7 66087761 66152277 + AC092143.1 chr16 89919165 89936092 + ACBD6 chr1 180269653 180502954 - ACLY chr17 41866917 41930542 - ACSS2 chr20 34872146 34927962 + ACTR2 chr2 65227753 65271253 + ADAM10 chr15 58588809 58749791 - AEBP2 chr12 19404045 19720801 + AEN chr15 88621337 88632281 + AGO4 chr1 35808016 35857890 + AGRN chr1 1020120 1056118 + AIMP2 chr7 6009255 6023834 + AKAP7 chr6 131135467 131283535 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008105.3 chr17 45190931 45222222 - AC008738.5 chr19 33301279 33301940 + AC016355.1 chr15 67541072 67542604 - AC022075.1 chr12 10363638 10398506 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA