exRNAdisease

Entry Detail

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General Information

Database ID: exR0389030 RNA Name: U2AF2 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 55654146 End Site(bp): 55674715 External Links: ENSG00000063244

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AACS chr12 125065434 125143333 + ABTB1 chr3 127672935 127680926 + AC010422.3 chr19 12643831 12648397 - AC011448.1 chr19 19516227 19536076 + AC027796.3 chr17 3585149 3636249 - AC105052.1 chr7 102582523 102642869 - AC135050.2 chr16 31083439 31094956 - ACTB chr7 5527148 5563784 - ADCY3 chr2 24819169 24919839 - ADRM1 chr20 62302093 62308862 + AEN chr15 88621337 88632281 + AFG3L2 chr18 12328944 12377227 - AHCYL1 chr1 109984765 110023742 + AKR1B1 chr7 134442356 134459284 - AKT2 chr19 40230317 40285536 - AL021546.1 chr12 120438198 120460006 + AL139011.2 chr1 160216800 160285130 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-5047 chr17 64501230 64501250 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA