exRNAdisease

Entry Detail

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General Information

Database ID: exR0389045 RNA Name: UBALD2 RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 76265348 End Site(bp): 76271298 External Links: ENSG00000185262

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + ABCA3 chr16 2275881 2340746 - AC005943.1 chr19 1578339 1605445 - AC008763.3 chr19 7678501 7682854 + AC010422.3 chr19 12643831 12648397 - AC011511.1 chr19 10305427 10316009 - AC024592.3 chr19 5866171 5903787 - AC092647.5 chr7 55887277 55955239 + AC093525.1 chr16 2513965 2527955 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADPRHL2 chr1 36088892 36093932 + AFF1 chr4 86935002 87141054 + AGER chr6 32180968 32184322 - AGO1 chr1 35869808 35930532 + AHCY chr20 34280268 34311802 - AKAP8L chr19 15380050 15419141 - AKNA chr9 114334156 114394405 - AL136531.2 chr20 1317571 1393096 - AL928654.3 chr14 105487199 105492267 + ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC067852.2 chr17 42552436 42554748 - AL021707.2 chr22 38667585 38681847 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA