exRNAdisease

Entry Detail

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General Information

Database ID: exR0389052 RNA Name: UBB RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 16380798 End Site(bp): 16382745 External Links: ENSG00000170315

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF2 chr7 151207837 151227166 - ABRACL chr6 139028745 139043302 + AC005258.1 chr19 2269525 2341172 + AC006064.6 chr12 6556886 6607367 - AC008763.3 chr19 7678501 7682854 + AC010422.3 chr19 12643831 12648397 - AC026954.2 chr17 7312661 7319174 - AC027644.4 chr7 66628958 66811189 + AC104452.1 chr3 49416777 49429314 - ACIN1 chr14 23058564 23095614 - ACLY chr17 41866917 41930542 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADARB1 chr21 45073853 45226560 + ADCY6 chr12 48766194 48789037 - AGBL5 chr2 27042364 27070622 + AGPAT4 chr6 161129967 161274061 - AK2 chr1 33007940 33080996 - AKR1A1 chr1 45550543 45570049 + AKR7A2 chr1 19303965 19312146 - AL136454.1 chr1 192716132 192716653 + AL136531.2 chr20 1317571 1393096 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006064.5 chr12 6510275 6510522 + AC008014.1 chr12 46383652 46876784 + AC069281.2 chr7 100572232 100578700 - AC073062.1 chr2 13537673 13609168 + AC107959.2 chr8 23068229 23083619 + AC126365.1 chr17 20788071 20789584 + AD000090.1 chr19 35557956 35581954 + AL117378.1 chr6 131901963 131920565 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA