exRNAdisease

Entry Detail

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General Information

Database ID: exR0389060 RNA Name: UBE2D3 RNA Type: mRNA Chromosome: chr4 Starnd: - Coordinate: Start Site(bp): 102794383 End Site(bp): 102868896 External Links: ENSG00000109332

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + ABCB7 chrX 75051048 75156732 - AC010422.3 chr19 12643831 12648397 - AC017083.3 chr2 68131238 68261230 - AC022384.1 chr3 10249372 10285796 + AC084337.2 chr11 6481485 6508978 + AC092143.1 chr16 89919165 89936092 + ACACA chr17 37084992 37406836 - ACSL3 chr2 222860942 222944639 + ACTB chr7 5527148 5563784 - ACTR3 chr2 113890063 113962596 + ACTR6 chr12 100199122 100241865 + ACYP1 chr14 75053237 75069483 - ADD3 chr10 109996368 110135565 + ADGRV1 chr5 90529344 91164437 + AGL chr1 99850361 99924023 + AHCYL1 chr1 109984765 110023742 + AHSA1 chr14 77457870 77469472 + AIF1L chr9 131096476 131123152 + AK4 chr1 65147549 65232145 + AKIRIN2 chr6 87674860 87702233 - AKR1A1 chr1 45550543 45570049 + ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009133.5 chr16 29808679 29812227 + AC020663.1 chr16 4730115 4752565 - AL117378.1 chr6 131901963 131920565 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA