exRNAdisease

Entry Detail

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General Information

Database ID: exR0389338 RNA Name: VAT1 RNA Type: mRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 43014607 End Site(bp): 43025123 External Links: ENSG00000108828

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC10 chr6 43427366 43450427 + ABHD17B chr9 71862452 71910931 - AC006486.1 chr19 42234583 42255132 - AC010422.3 chr19 12643831 12648397 - AC093525.2 chr16 2496032 2520218 + AC245033.1 chr15 82536788 82573194 - ACTB chr7 5527148 5563784 - ACTC1 chr15 34790230 34795549 - ACTG1 chr17 81509971 81523847 - ACTN1 chr14 68874143 68979440 - ACTN3 chr11 66546395 66563334 + ADAM15 chr1 155050566 155062775 + ADPGK chr15 72751369 72785846 - AIF1L chr9 131096476 131123152 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-23a-3p chr19 13836595 13836615 - hsa-miR-124-3p chr8 64379210 64379231 + hsa-miR-642a-5p chr19 45674943 45674964 + hsa-miR-769-5p chr19 46018961 46018982 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008753.2 chr19 53788782 53789168 + AC020663.1 chr16 4730115 4752565 - AC026362.1 chr12 122975320 122982907 + AC245014.3 chr1 145281116 145281462 + AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA