exRNAdisease

Entry Detail

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General Information

Database ID: exR0389347 RNA Name: VCL RNA Type: mRNA Chromosome: chr10 Starnd: + Coordinate: Start Site(bp): 73995193 End Site(bp): 74121363 External Links: ENSG00000035403

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCB6 chr2 219209772 219218994 - ABCF1 chr6 30571393 30597179 + ABHD14B chr3 51968510 51983409 - AC005943.1 chr19 1578339 1605445 - AC010132.3 chr7 42909273 42932174 - AC023055.1 chr12 55757275 55827546 - AC068946.2 chr2 219209772 219222738 - AC093525.2 chr16 2496032 2520218 + AC131160.1 chr3 183815568 183884889 - AC137834.1 chr12 57249609 57296484 - ACTN4 chr19 38647649 38731589 + ADH5 chr4 99070978 99088801 - AGRN chr1 1020120 1056118 + AL133352.1 chr10 100505628 100529881 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-455-5p chr9 114209449 114209470 + hsa-miR-361-3p chrX 85903641 85903663 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC022819.1 chr15 99157231 99161140 - AC115284.1 chr3 51961212 51974031 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA