exRNAdisease

Entry Detail

---



General Information

Database ID: exR0389348 RNA Name: VCP RNA Type: mRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 35056064 End Site(bp): 35072627 External Links: ENSG00000165280

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AACS chr12 125065434 125143333 + ABHD12 chr20 25294742 25390835 - AC005258.1 chr19 2269525 2341172 + AC010422.3 chr19 12643831 12648397 - AC073896.1 chr12 56285916 56316059 - AC091167.2 chr15 90249556 90272208 + AC093525.2 chr16 2496032 2520218 + ACADS chr12 120725774 120740008 + ACBD6 chr1 180269653 180502954 - ACTG1 chr17 81509971 81523847 - ADAR chr1 154582057 154628013 - ADH5 chr4 99070978 99088801 - AL121753.1 chr20 35267885 35280043 - ALDH2 chr12 111766887 111817532 + ALDH7A1 chr5 126531200 126595362 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-331-3p chr12 95308480 95308500 + hsa-miR-339-5p chr7 1022990 1023012 - hsa-miR-520a-5p chr19 53690895 53690915 + hsa-miR-450b-5p chrX 134540231 134540252 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002310.1 chr16 30534752 30537149 + AC112484.1 chr3 128860620 128871540 - AC132217.1 chr11 2129121 2129964 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL031282.2 chr1 1702736 1737688 - AL121992.1 chr1 15586136 15603626 - AL135925.1 chr10 79825902 79827602 + AL136985.3 chr1 58715609 58771295 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA