exRNAdisease

Entry Detail

General Information

Database ID:

exR0389406

RNA Name:

VPS35

RNA Type:

mRNA

Chromosome:

chr16

Starnd:

-

Coordinate:

Start Site(bp):

46656132

End Site(bp):

46689518

External Links:

ENSG00000069329

Disease Information

Disease Name:	Low Birth Weight
Disease Category:	Other Diseases
MeSH ID:	D007230
Type:	Age Groups/Infant
Alias:	Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID:	GSE29807
Description:	Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:	Disease vs Control
Case Disease Type:	Low Birth Weight
Case Disease SubType:	NA
Case Sample:	Low Birth Weight
Control Sample:	Normal
Number of Case:	8
Number of Control:	4
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ABCB7	chrX	75051048	75156732	-
AC010422.3	chr19	12643831	12648397	-
AC011455.2	chr19	38915404	38949855	-
AC090004.1	chr3	14135217	14148252	+
AC092143.1	chr16	89919165	89936092	+
ACTN3	chr11	66546395	66563334	+
ADGRB2	chr1	31727117	31764893	-
ALDOA	chr16	30064164	30070457	+

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-302d-3p	chr4	112648006	112648028	-
hsa-miR-367-3p	chr4	112647877	112647898	-

circRNA targets:

NA

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC090673.1	chr12	65934777	65948479	-
AL135905.1	chr6	63571005	63572408	-

Display:

Experiment Detail

GEO ID:	GSE29807
Sample Source:	Cord Blood
Source Fraction:	Umblical Cord Blood
Platform:	GPL570
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	17063
Sample treatment protocol:	NA
RNA Extract protocol:	The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA