exRNAdisease

Entry Detail

General Information

Database ID:

exR0389471

RNA Name:

WDFY3

RNA Type:

mRNA

Chromosome:

chr4

Starnd:

-

Coordinate:

Start Site(bp):

84669610

End Site(bp):

84966391

External Links:

ENSG00000163625

Disease Information

Disease Name:	Low Birth Weight
Disease Category:	Other Diseases
MeSH ID:	D007230
Type:	Age Groups/Infant
Alias:	Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID:	GSE29807
Description:	Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:	Disease vs Control
Case Disease Type:	Low Birth Weight
Case Disease SubType:	NA
Case Sample:	Low Birth Weight
Control Sample:	Normal
Number of Case:	8
Number of Control:	4
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ABO	chr9	133250401	133276024	-
AC008763.3	chr19	7678501	7682854	+
ACTB	chr7	5527148	5563784	-
ACTG1	chr17	81509971	81523847	-
AGAP3	chr7	151085831	151144436	+
AKIRIN1	chr1	38991276	39006059	+

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-33a-5p	chr22	41900949	41900969	+
hsa-miR-103a-3p	chr5	168560904	168560926	-
hsa-miR-33b-5p	chr17	17813897	17813916	-

circRNA targets:

NA

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC027290.2	chr12	122865335	122867021	+
AC062029.1	chr2	88690177	88691464	-
AL021707.2	chr22	38667585	38681847	-

Display:

Experiment Detail

GEO ID:	GSE29807
Sample Source:	Cord Blood
Source Fraction:	Umblical Cord Blood
Platform:	GPL570
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	17063
Sample treatment protocol:	NA
RNA Extract protocol:	The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA