exRNAdisease

Entry Detail

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General Information

Database ID: exR0389643 RNA Name: XRCC5 RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 216107464 End Site(bp): 216206303 External Links: ENSG00000079246

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + AC002985.1 chr19 18907013 18934397 - AC023055.1 chr12 55757275 55827546 - AC097637.1 chr3 52221081 52231190 - AC107871.1 chr15 68184032 68229718 - AC120057.2 chr17 7240427 7244635 - AC124312.1 chr15 24955034 25000276 + AC244197.3 chrX 149477104 149540926 - AC245033.1 chr15 82536788 82573194 - ACO1 chr9 32384603 32454769 + ACSS2 chr20 34872146 34927962 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR2 chr2 65227753 65271253 + ADA chr20 44619522 44652233 - ADGRA3 chr4 22345071 22516066 - ADIPOR2 chr12 1688574 1788674 + AFF1 chr4 86935002 87141054 + AHCY chr20 34280268 34311802 - AIF1L chr9 131096476 131123152 + AIMP1 chr4 106315544 106349456 + AKIRIN1 chr1 38991276 39006059 + AKR1A1 chr1 45550543 45570049 + AL136295.4 chr14 24180395 24190416 - AL162417.1 chr9 133098121 133163914 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC040162.3 chr16 67882461 67886367 + AC136475.2 chr11 310139 311141 - AC245033.4 chr15 82533175 82540008 - AFDN-DT chr6 167822103 167826812 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA