exRNAdisease

Entry Detail

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General Information

Database ID: exR0389644 RNA Name: XRCC6 RNA Type: mRNA Chromosome: chr22 Starnd: + Coordinate: Start Site(bp): 41621119 End Site(bp): 41664048 External Links: ENSG00000196419

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASDHPPT chr11 106075501 106098699 + ABR chr17 1003518 1229738 - ABRAXAS1 chr4 83459517 83523348 - AC005020.2 chr7 99558695 99607810 + AC010132.3 chr7 42909273 42932174 - AC010422.3 chr19 12643831 12648397 - AC068946.1 chr2 219075329 219170827 - AC099811.2 chr17 42119674 42154916 - AC120057.2 chr17 7240427 7244635 - ACADVL chr17 7217125 7225266 + ACOT8 chr20 45841721 45857405 - ACTN1 chr14 68874143 68979440 - ACTR1A chr10 102461881 102502712 - ADAM10 chr15 58588809 58749791 - ADAM15 chr1 155050566 155062775 + ADCY3 chr2 24819169 24919839 - AKR1B1 chr7 134442356 134459284 - AL358113.1 chr9 69035747 69255187 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-17-5p chr13 91350618 91350640 + hsa-miR-18a-5p chr13 91350756 91350778 + hsa-miR-205-5p chr1 209432166 209432187 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC079781.5 chr7 97851688 97972985 - AC093157.1 chr1 101025844 101090513 + AC144548.1 chr12 110387463 110445548 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA