exRNAdisease

Entry Detail

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General Information

Database ID: exR0389691 RNA Name: YWHAQ RNA Type: mRNA Chromosome: chr2 Starnd: - Coordinate: Start Site(bp): 9583967 End Site(bp): 9630997 External Links: ENSG00000134308

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAGAB chr15 67200667 67255195 - ABCA2 chr9 137007234 137028922 - ABCB7 chrX 75051048 75156732 - ABCC4 chr13 95019835 95301475 - ABI2 chr2 203328239 203447728 + ABRACL chr6 139028745 139043302 + AC010323.1 chr19 8308283 8321379 - AC011005.1 chr7 129126518 129130793 + AC018523.2 chr11 14493783 14520344 - AC245033.1 chr15 82536788 82573194 - ACADSB chr10 123008979 123058290 + ACAP1 chr17 7336529 7351477 + ACTN4 chr19 38647649 38731589 + ADAT2 chr6 143422832 143450695 - ADO chr10 62804720 62808479 + AFTPH chr2 64524305 64593005 + AKAP13 chr15 85380571 85749358 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-5047 chr17 64501230 64501250 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC023509.1 chr12 53441741 53467528 + AC079781.5 chr7 97851688 97972985 - AC126365.1 chr17 20788071 20789584 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA