exRNAdisease

Entry Detail

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General Information

Database ID: exR0389693 RNA Name: YY1 RNA Type: mRNA Chromosome: chr14 Starnd: + Coordinate: Start Site(bp): 100238298 End Site(bp): 100282788 External Links: ENSG00000100811

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABRACL chr6 139028745 139043302 + AC004832.3 chr22 30409255 30428990 + AC008982.1 chr19 38817471 38840178 - AC010422.3 chr19 12643831 12648397 - AC078927.1 chr12 66123917 66169985 - AC090517.4 chr15 56652488 56918571 - AC139530.2 chr17 81703371 81720539 + ACACA chr17 37084992 37406836 - ACTG1 chr17 81509971 81523847 - ADAM10 chr15 58588809 58749791 - AKR1A1 chr1 45550543 45570049 + AKT1 chr14 104769349 104795751 - AL136454.1 chr1 192716132 192716653 + AL590132.1 chr1 210858125 211134146 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4426 chr1 192716333 192716349 + hsa-miR-6764-3p chr14 100277397 100277417 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC018521.1 chr17 47945424 47981736 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA