exRNAdisease

Entry Detail

General Information

Database ID:

exR0389817

RNA Name:

ZDHHC9

RNA Type:

mRNA

Chromosome:

chrX

Starnd:

-

Coordinate:

Start Site(bp):

129803288

End Site(bp):

129843909

External Links:

ENSG00000188706

Disease Information

Disease Name:	Low Birth Weight
Disease Category:	Other Diseases
MeSH ID:	D007230
Type:	Age Groups/Infant
Alias:	Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID:	GSE29807
Description:	Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:	Disease vs Control
Case Disease Type:	Low Birth Weight
Case Disease SubType:	NA
Case Sample:	Low Birth Weight
Control Sample:	Normal
Number of Case:	8
Number of Control:	4
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC008575.1	chr5	112827213	112867582	+
AC048338.1	chr12	122207779	122266423	-
ACIN1	chr14	23058564	23095614	-
ACTN4	chr19	38647649	38731589	+
AGAP3	chr7	151085831	151144436	+
AKAP9	chr7	91940867	92110673	+

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-33a-5p	chr22	41900949	41900969	+
hsa-miR-185-5p	chr22	20033153	20033174	+
hsa-miR-769-5p	chr19	46018961	46018982	+
hsa-miR-423-5p	chr17	30117095	30117117	+
hsa-miR-1321	chrX	85835832	85835849	+

circRNA targets:

NA

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC006504.1	chr19	27757184	27760849	-

Display:

Experiment Detail

GEO ID:	GSE29807
Sample Source:	Cord Blood
Source Fraction:	Umblical Cord Blood
Platform:	GPL570
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	17063
Sample treatment protocol:	NA
RNA Extract protocol:	The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA