exRNAdisease

Entry Detail

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General Information

Database ID: exR0390054 RNA Name: ZNF354B RNA Type: mRNA Chromosome: chr5 Starnd: + Coordinate: Start Site(bp): 178859953 End Site(bp): 178888122 External Links: ENSG00000178338

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008982.1 chr19 38817471 38840178 - AC009690.3 chr15 72266746 72319946 - AC093668.1 chr7 102541501 102592444 - ACAD9 chr3 128879596 128916067 + ACLY chr17 41866917 41930542 - ACSF3 chr16 89088375 89164121 + ACTB chr7 5527148 5563784 - ACTR1A chr10 102461881 102502712 - ADAM15 chr1 155050566 155062775 + ADAM19 chr5 157395534 157575775 - ADARB1 chr21 45073853 45226560 + ADD2 chr2 70607618 70768225 - ADSL chr22 40346500 40390463 + AHCY chr20 34280268 34311802 - AHCYL1 chr1 109984765 110023742 + AIF1L chr9 131096476 131123152 + AKAP13 chr15 85380571 85749358 + AKT2 chr19 40230317 40285536 - AL021546.1 chr12 120438198 120460006 + AL022238.4 chr22 40346529 40410054 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4517 chr16 28958587 28958611 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC005899.4 chr17 32328441 32329395 + AC007952.4 chr17 19112000 19112636 - AC011445.1 chr19 39314651 39320858 - AC067930.1 chr8 143579636 143580670 + AC084082.1 chr8 66112667 66126632 + AC144548.1 chr12 110387463 110445548 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL117378.1 chr6 131901963 131920565 + AL132780.1 chr14 22929607 22956374 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA