exRNAdisease

Entry Detail

General Information

Database ID:

exR0390235

RNA Name:

ZNF623

RNA Type:

mRNA

Chromosome:

chr8

Starnd:

+

Coordinate:

Start Site(bp):

143636013

End Site(bp):

143656418

External Links:

ENSG00000183309

Disease Information

Disease Name:	Low Birth Weight
Disease Category:	Other Diseases
MeSH ID:	D007230
Type:	Age Groups/Infant
Alias:	Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID:	GSE29807
Description:	Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:	Disease vs Control
Case Disease Type:	Low Birth Weight
Case Disease SubType:	NA
Case Sample:	Low Birth Weight
Control Sample:	Normal
Number of Case:	8
Number of Control:	4
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ABHD14A-ACY1	chr3	51974706	51989183	+
AC005258.1	chr19	2269525	2341172	+
AC010132.3	chr7	42909273	42932174	-
ACY1	chr3	51983340	51989197	+
ADGRG2	chrX	18989307	19122637	-

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-34a-5p	chr1	9151735	9151756	-
hsa-miR-34c-5p	chr11	111513451	111513473	+
hsa-miR-449a	chr5	55170586	55170607	-
hsa-miR-650	chr22	22822791	22822811	+
hsa-miR-449b-5p	chr5	55170706	55170727	-

circRNA targets:

NA

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC132217.1	chr11	2129121	2129964	-
AF111169.1	chr14	76778952	76782249	+

Display:

Experiment Detail

GEO ID:	GSE29807
Sample Source:	Cord Blood
Source Fraction:	Umblical Cord Blood
Platform:	GPL570
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	17063
Sample treatment protocol:	NA
RNA Extract protocol:	The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA