Entry Detail


General Information

Database ID:exR0390448
RNA Name:AAAS
RNA Type:mRNA
Chromosome:chr12
Starnd:-
Coordinate:
Start Site(bp):53307456End Site(bp):53324864
External Links:ENSG00000094914



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MSI1
chr12
120341330
120369164
-
RPL11
chr1
23691742
23696835
+
RPLP2
chr11
809965
812880
+
MIF
chr22
23894383
23895227
+
MRPS10
chr6
42206807
42217861
-
RCSD1
chr1
167630093
167708696
+
LRCH4
chr7
100574011
100586129
-
LRP2
chr2
169127109
169362534
-
MEX3C
chr18
51174550
51218304
-
MTRNR2L12
chr3
96617188
96618236
-
MTA1
chr14
105419820
105470729
+
B2M
chr15
44711487
44718877
+
CDC25B
chr20
3786772
3806121
+
SFPQ
chr1
35176378
35193145
-
ZNF207
chr17
32350117
32381886
+
VPS41
chr7
38722974
38932394
-
RPL13
chr16
89560657
89566828
+
METTL16
chr17
2405562
2511891
-
MAPK14
chr6
36027677
36111236
+
CD99
chrX
2691187
2741309
+
YBX3
chr12
10699089
10723323
-
AP000350.4
chr22
23862188
23895223
+
PKM
chr15
72199029
72231822
-
FRAS1
chr4
78057323
78544269
+
LRIG1
chr3
66378797
66501263
-
RACK1
chr5
181236897
181248096
-
ALDOA
chr16
30064164
30070457
+
MYL6
chr12
56158161
56163496
+
NBR1
chr17
43170481
43211689
+
LAMA5
chr20
62307955
62367312
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC069281.2
chr7
100572232
100578700
-
PCAT6
chr1
202810954
202812156
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA