Entry Detail


General Information

Database ID:exR0390453
RNA Name:AAGAB
RNA Type:mRNA
Chromosome:chr15
Starnd:-
Coordinate:
Start Site(bp):67200667End Site(bp):67255195
External Links:ENSG00000103591



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
BTBD1
chr15
83016423
83067252
-
PIMREG
chr17
6444441
6451469
+
HNRNPA1
chr12
54280193
54287088
+
SETD1A
chr16
30957754
30984664
+
RAC3
chr17
82031678
82034204
+
ARF4
chr3
57571363
57598220
-
RPL27
chr17
42998273
43002959
+
HSDL1
chr16
84122141
84145192
-
CHD7
chr8
60678740
60868028
+
CRABP2
chr1
156699606
156705816
-
DUT
chr15
48331011
48343373
+
UNC119B
chr12
120710458
120723640
+
PRDM2
chr1
13700198
13825079
+
BCAP31
chrX
153700492
153724565
-
TOMM20
chr1
235109341
235128837
-
CDPF1
chr22
46244011
46250311
-
MRPL45
chr17
38297023
38323217
+
CHMP3
chr2
86503430
86563479
-
RPS23
chr5
82273320
82278396
-
RTN4
chr2
54972187
55112621
-
CCND2
chr12
4273762
4305353
+
FUS
chr16
31180110
31194871
+
YWHAQ
chr2
9583967
9630997
-
PFN1
chr17
4945652
4949061
-
GPAM
chr10
112149865
112215377
-
HYAL2
chr3
50317790
50322782
-
R3HDM1
chr2
135531455
135725270
+
FTL
chr19
48965309
48966879
+
RPL10A
chr6
35468401
35470785
+
RIC1
chr9
5629025
5776557
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
HLA-F-AS1
chr6
29726601
29749049
-
PARD6G-AS1
chr18
80147924
80179839
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA