Entry Detail


General Information

Database ID:exR0390460
RNA Name:AARSD1
RNA Type:mRNA
Chromosome:chr17
Starnd:-
Coordinate:
Start Site(bp):42950526End Site(bp):42964498
External Links:ENSG00000266967



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
PTMS
chr12
6765516
6770952
+
KBTBD7
chr13
41189834
41194569
-
PPDPF
chr20
63520765
63522206
+
PPP1CC
chr12
110719680
110742939
-
BLOC1S5-TXNDC5
chr6
7881522
8064364
-
ZNF777
chr7
149431363
149461062
-
CALM3
chr19
46601074
46610782
+
HIGD2A
chr5
176388751
176389761
+
RPL35A
chr3
197950190
197956610
+
HNRNPF
chr10
43385617
43409166
-
CCNT2
chr2
134918235
134959342
+
ERI2
chr16
20780193
20900349
-
RPUSD3
chr3
9837849
9844602
-
TPT1
chr13
45333471
45341370
-
RNPS1
chr16
2253116
2268397
-
CALR
chr19
12938578
12944489
+
PTGES3L-AARSD1
chr17
42950526
42980528
-
RNF213
chr17
80260866
80398786
+
SASH3
chrX
129779949
129795201
+
EDARADD
chr1
236348257
236502915
+
CST3
chr20
23626706
23638473
-
SKI
chr1
2228319
2310213
+
MRPL13
chr8
120380761
120445402
-
TMEM258
chr11
61768501
61792802
-
ASB8
chr12
48147789
48181213
-
RPL27
chr17
42998273
43002959
+
GSPT2
chrX
51743442
51746232
+
TXNDC5
chr6
7881517
7910788
-
DYNLL1
chr12
120469850
120498493
+
TRMU
chr22
46330875
46357340
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
Z95114.1
chr22
36071000
36085573
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA