Entry Detail


General Information

Database ID:exR0390461
RNA Name:AASDH
RNA Type:mRNA
Chromosome:chr4
Starnd:-
Coordinate:
Start Site(bp):56338287End Site(bp):56387508
External Links:ENSG00000157426



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CANT1
chr17
78991716
79009867
-
EMC7
chr15
34084017
34101862
-
EPN1
chr19
55675226
55709858
+
GAPDH
chr12
6534512
6538374
+
GK3P
chr4
165277812
165279679
-
GOLPH3
chr5
32124716
32174319
-
HMGCR
chr5
75336329
75362101
+
HOXB1
chr17
48528526
48531011
-
LARP6
chr15
70829130
70854157
-
MAST3
chr19
18097793
18151692
+
MGST1
chr12
16347142
16609259
+
MTHFD2
chr2
74198610
74217565
+
MTRNR2L12
chr3
96617188
96618236
-
NDUFS5
chr1
39026318
39034636
+
PIP5K1A
chr1
151197949
151249536
+
PLCXD1
chrX
276322
303356
+
RBFOX2
chr22
35738736
36028824
-
RER1
chr1
2391775
2405442
+
RPS18
chr6
33272075
33276511
+
SLC11A2
chr12
50979401
51028566
-
SPAG9
chr17
50962174
51120868
-
TFPI
chr2
187464230
187565760
-
TPP1
chr11
6612768
6619448
-
UBE2I
chr16
1308880
1327018
+
UGP2
chr2
63840940
63891562
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC012485.1
chr2
238231684
238255633
+
NAALADL2-AS2
chr3
175234861
175271096
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA