Entry Detail


General Information

Database ID:exR0390467
RNA Name:ABCA1
RNA Type:mRNA
Chromosome:chr9
Starnd:-
Coordinate:
Start Site(bp):104781006End Site(bp):104928155
External Links:ENSG00000165029



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
COX5B
chr2
97646062
97648383
+
EIF3L
chr22
37848868
37889407
+
EWSR1
chr22
29268009
29300525
+
FEN1
chr11
61792911
61797238
+
GANAB
chr11
62624826
62646726
-
GAPDH
chr12
6534512
6538374
+
HADH
chr4
107989714
108035175
+
IGF2
chr11
2129112
2141238
-
IGF2BP3
chr7
23310209
23470491
-
KDM3B
chr5
138352685
138437028
+
LSMEM1
chr7
112480853
112491062
+
LUC7L3
chr17
50719565
50756219
+
MPI
chr15
74890005
74902219
+
NISCH
chr3
52455118
52493068
+
PIANP
chr12
6693792
6700800
-
PPRC1
chr10
102132994
102150333
+
RPL13A
chr19
49487554
49492308
+
RPL14
chr3
40457292
40468587
+
RPL19
chr17
39200283
39204732
+
RPS23
chr5
82273320
82278396
-
SEC11A
chr15
84669538
84716460
-
SHROOM3
chr4
76435229
76783253
+
SND1
chr7
127652194
128092609
+
UBE2R2
chr9
33817160
33920399
+
ZNF217
chr20
53567065
53609907
-
ZNF568
chr19
36916329
36998700
+
ZNF696
chr8
143289676
143299952
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-1294
chr5
154347153
154347174
+
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA