Entry Detail


General Information

Database ID:exR0390475
RNA Name:ABCA7
RNA Type:mRNA
Chromosome:chr19
Starnd:+
Coordinate:
Start Site(bp):1039997End Site(bp):1065572
External Links:ENSG00000064687



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC008982.1
chr19
38817471
38840178
-
AGPAT2
chr9
136673143
136687457
-
ANP32E
chr1
150218417
150236156
-
ATP2B4
chr1
203626561
203744081
+
CCNE1
chr19
29811991
29824312
+
CD99
chrX
2691187
2741309
+
EIF4G3
chr1
20806292
21176888
-
FAM50A
chrX
154444141
154450654
+
GNB1
chr1
1785285
1891117
-
HMGXB3
chr5
150000046
150053142
+
HNRNPL
chr19
38836388
38852347
-
ILF3
chr19
10654261
10692417
+
LRRK1
chr15
100919327
101078257
+
MDH2
chr7
76048051
76067508
+
METTL24
chr6
110245928
110358272
-
MPG
chr16
77007
85853
+
MT-CO1
chrMT
5904
7445
+
MTRNR2L8
chr11
10507894
10509186
-
PARP6
chr15
72241181
72272999
-
SLC29A2
chr11
66362521
66372214
-
SNX17
chr2
27370496
27377535
+
SRSF1
chr17
58000919
58007346
-
TMCO3
chr13
113491021
113554590
+
TMEM201
chr1
9588911
9614877
+
TMEM69
chr1
45688181
45694436
+
TNKS
chr8
9555912
9782346
+
TSPAN3
chr15
77041404
77083984
-
TUBA1A
chr12
49184795
49189080
-
ZNF200
chr16
3222325
3236221
-
ZNF800
chr7
127346790
127431924
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
LINC01783
chr1
16533886
16536172
-
SNHG17
chr20
38419638
38435409
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA