Entry Detail


General Information

Database ID:exR0390481
RNA Name:ABCB4
RNA Type:mRNA
Chromosome:chr7
Starnd:-
Coordinate:
Start Site(bp):87401697End Site(bp):87480435
External Links:ENSG00000005471



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCB1
chr7
87503017
87713323
-
AP1G2
chr14
23559565
23568070
-
BASP1
chr5
17065598
17276843
+
CENPV
chr17
16342534
16353656
-
CLDN6
chr16
3014712
3020071
-
CUL5
chr11
108008898
108107761
+
DDX5
chr17
64498254
64508199
-
EIF5A
chr17
7306999
7312463
+
FXR2
chr17
7591230
7614897
-
HNRNPDL
chr4
82422564
82430408
-
HSPA8
chr11
123057489
123063230
-
HTATSF1
chrX
136497079
136512346
+
KIF5B
chr10
32009015
32056425
-
MAF1
chr8
144104461
144107611
+
NUAK1
chr12
106063340
106140033
-
PAM
chr5
102753981
103031105
+
PHF14
chr7
10973336
11169630
+
RPL5
chr1
92832013
92841924
+
SERF2
chr15
43777087
43802589
+
SLC39A1
chr1
153959099
153968184
-
SNX18
chr5
54517759
54546586
+
SPOCK2
chr10
72059034
72089032
-
STX7
chr6
132445867
132513198
-
TMEM167A
chr5
83052846
83077863
-
TPT1
chr13
45333471
45341370
-
ZNF136
chr19
12163064
12189871
+
ZNF385A
chr12
54369133
54391298
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA