Entry Detail


General Information

Database ID:exR0390485
RNA Name:ABCB8
RNA Type:mRNA
Chromosome:chr7
Starnd:+
Coordinate:
Start Site(bp):151028422End Site(bp):151047782
External Links:ENSG00000197150



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
USP20
chr9
129834698
129881838
+
RANBP1
chr22
20115938
20127355
+
BAG6
chr6
31639028
31652705
-
FKRP
chr19
46746046
46776988
+
SOX2
chr3
181711925
181714436
+
KPNA4
chr3
160495007
160565571
-
ATP6AP1
chrX
154428645
154436516
+
THRA
chr17
40058290
40093867
+
PTK7
chr6
43076307
43161719
+
FAM107B
chr10
14518557
14774897
-
TRMT2A
chr22
20111875
20117392
-
AC068946.2
chr2
219209772
219222738
-
YIF1B
chr19
38303558
38317273
-
FLOT1
chr6
30727709
30742732
-
HSPA1B
chr6
31827738
31830254
+
DVL3
chr3
184155377
184173614
+
EME2
chr16
1772810
1781708
+
OAZ1
chr19
2269509
2273490
+
SLC37A4
chr11
119024114
119030906
-
DDB1
chr11
61299451
61342596
-
LAMB2
chr3
49121114
49133118
-
SLC19A1
chr21
45493572
45573365
-
NKRF
chrX
119588337
119606443
-
LOXL1
chr15
73925989
73952137
+
TMBIM1
chr2
218274197
218292586
-
APBB1
chr11
6395124
6419414
-
ADNP2
chr18
80109262
80147523
+
AFF4
chr5
132875395
132963634
-
SENP3-EIF4A1
chr17
7563287
7578715
+
SMG1
chr16
18804853
18926454
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016876.2
chr17
7581964
7584086
-
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA