Entry Detail


General Information

Database ID:exR0390487
RNA Name:ABCC1
RNA Type:mRNA
Chromosome:chr16
Starnd:+
Coordinate:
Start Site(bp):15949577End Site(bp):16143074
External Links:ENSG00000103222



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
TMED2
chr12
123584533
123598582
+
PCDHGB6
chr5
141408021
141512979
+
ADGRV1
chr5
90529344
91164437
+
CENPU
chr4
184694085
184734130
-
RFC5
chr12
118013588
118033130
+
BLVRB
chr19
40447765
40465764
-
MACF1
chr1
39081316
39487177
+
RPS5
chr19
58386400
58394806
+
SETD1A
chr16
30957754
30984664
+
CRTC3
chr15
90529923
90645345
+
PCDHGB1
chr5
141350102
141512979
+
PCDHGA8
chr5
141390157
141512979
+
NUCKS1
chr1
205712822
205750182
-
MT-ND4
chrMT
10760
12137
+
ASXL1
chr20
32358330
32439319
+
STRBP
chr9
123109500
123268586
-
UBE2S
chr19
55399745
55407788
-
ZDHHC4
chr7
6577434
6589374
+
NOP53
chr19
47745546
47757058
+
CD52
chr1
26317958
26320523
+
PSMB9
chr6
32844136
32859851
+
PCDHGA7
chr5
141382739
141512975
+
MT-CYB
chrMT
14747
15887
+
MT-ND5
chrMT
12337
14148
+
PCDHGA6
chr5
141373914
141512979
+
PCDHGA5
chr5
141364232
141512979
+
EIF4G2
chr11
10797050
10808940
-
MT-CO2
chrMT
7586
8269
+
SC5D
chr11
121292681
121313410
+
AC104109.3
chr5
134167170
134226071
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AD000090.1
chr19
35557956
35581954
+
AL136419.1
chr14
23969931
24051377
+
AC138932.3
chr16
14909887
14911345
-
ERVK13-1
chr16
2660348
2682379
-
GAS5
chr1
173858559
173868882
-
MIR663AHG
chr20
26167817
26251546
-
SNHG17
chr20
38419638
38435409
-
SNHG19
chr16
2154797
2155358
-
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA