Entry Detail


General Information

Database ID:exR0390502
RNA Name:ABCE1
RNA Type:mRNA
Chromosome:chr4
Starnd:+
Coordinate:
Start Site(bp):145098288End Site(bp):145129524
External Links:ENSG00000164163



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MGST1
chr12
16347142
16609259
+
MTX2
chr2
176269395
176338025
+
RPL37A
chr2
216498825
216579180
+
FAM162A
chr3
122384176
122412334
+
ENOPH1
chr4
82430590
82461177
+
ANKRD17
chr4
73073376
73258798
-
SLC25A29
chr14
100291116
100306547
-
INSIG1
chr7
155297776
155310235
+
LAMTOR1
chr11
72085895
72103297
-
GNB5
chr15
52115105
52191369
-
IVNS1ABP
chr1
185296388
185317273
-
TIMMDC1
chr3
119498547
119525090
+
HOXA3
chr7
27106184
27152581
-
STMN1
chr1
25884181
25906991
-
UGP2
chr2
63840940
63891562
+
RPL3
chr22
39312882
39320389
-
PGK1
chrX
77910739
78129295
+
RBL2
chr16
53433977
53491648
+
BCAT1
chr12
24810024
24949101
-
RPS23
chr5
82273320
82278396
-
TNPO2
chr19
12699194
12724011
-
TUBB
chr6
30720352
30725426
+
CHTF8
chr16
69118010
69132578
-
CLPTM1L
chr5
1317752
1345099
-
RAB10
chr2
26034084
26137454
+
MDH2
chr7
76048051
76067508
+
CREBZF
chr11
85659708
85682908
-
C19orf48
chr19
50797704
50804929
-
EWSR1
chr22
29268009
29300525
+
ATP5MG
chr11
118401606
118431496
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL157871.6
chr14
100279959
100291456
-
FAM215B
chr17
46558830
46562795
-
MAPKAPK5-AS1
chr12
111839764
111842902
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA