Entry Detail


General Information

Database ID:exR0390533
RNA Name:ABI2
RNA Type:mRNA
Chromosome:chr2
Starnd:+
Coordinate:
Start Site(bp):203328239End Site(bp):203447728
External Links:ENSG00000138443



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
C15orf39
chr15
75195643
75212169
+
KLC1
chr14
103561896
103714249
+
PGAM1
chr10
97426191
97433444
+
ESPL1
chr12
53268299
53293638
+
COX5B
chr2
97646062
97648383
+
MYH9
chr22
36281277
36388067
-
YWHAQ
chr2
9583967
9630997
-
HLA-DQA1
chr6
32628179
32647062
+
MAN1B1
chr9
137086985
137109183
+
PUDP
chrX
6667865
7148190
-
PEX19
chr1
160276812
160286348
-
PKM
chr15
72199029
72231822
-
TRAF7
chr16
2155698
2178129
+
DICER1
chr14
95086228
95158010
-
LAMTOR4
chr7
100148907
100155944
+
ATN1
chr12
6924463
6942321
+
LMNB1
chr5
126776623
126837020
+
AL139300.1
chr14
103562962
103685924
+
SLC15A4
chr12
128793194
128823958
-
CCT2
chr12
69585426
69601570
+
NPLOC4
chr17
81556887
81648465
-
MT-CO3
chrMT
9207
9990
+
SLC9A3R1
chr17
74748628
74769353
+
API5
chr11
43311963
43344529
+
HSDL2
chr9
112380080
112472405
+
BOLA2-SMG1P6
chr16
29443230
29454651
-
TXNDC5
chr6
7881517
7910788
-
C9orf40
chr9
74946583
74952912
-
RPL22L1
chr3
170864875
170870208
-
HYOU1
chr11
119044188
119057227
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-218-5p
chr5
168768211
168768231
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC079354.2
chr2
202178660
202179391
-
ARHGAP27P1-BPTFP1-KPNA2P3
chr17
64749663
64781707
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA