Entry Detail


General Information

Database ID:exR0390534
RNA Name:ABI3
RNA Type:mRNA
Chromosome:chr17
Starnd:+
Coordinate:
Start Site(bp):49210411End Site(bp):49223225
External Links:ENSG00000108798



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010422.3
chr19
12643831
12648397
-
ANKRD46
chr8
100509752
100559784
-
CDC37
chr19
10391133
10420121
-
CFLAR
chr2
201116154
201176687
+
ETAA1
chr2
67397322
67412089
+
GRK2
chr11
67266473
67286556
+
HSPA8
chr11
123057489
123063230
-
LMNB2
chr19
2427638
2456959
-
MSN
chrX
65588377
65741931
+
MYL6B
chr12
56152256
56159647
+
PBK
chr8
27809624
27838082
-
PPP1R32
chr11
61481120
61490931
+
PPP4C
chr16
30075978
30085376
+
PTDSS2
chr11
448268
491399
+
RHOG
chr11
3826978
3840959
-
RPL8
chr8
144789765
144792587
-
RPS8
chr1
44775251
44778779
+
SKP1
chr5
134148935
134177038
-
TMEM216
chr11
61392360
61398863
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA