Entry Detail


General Information

Database ID:exR0390536
RNA Name:ABL1
RNA Type:mRNA
Chromosome:chr9
Starnd:+
Coordinate:
Start Site(bp):130713016End Site(bp):130887675
External Links:ENSG00000097007



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CXCL12
chr10
44370165
44386493
-
ASXL2
chr2
25733753
25878487
-
TMEM115
chr3
50354750
50359521
-
STK11
chr19
1177558
1228431
+
TMEM214
chr2
27032910
27041694
+
NOP53
chr19
47745546
47757058
+
TSC2
chr16
2047967
2089491
+
CHTOP
chr1
153633982
153646306
+
ZMYM3
chrX
71239624
71255146
-
NUTF2
chr16
67846923
67872567
+
DBNDD2
chr20
45406057
45410610
+
PCGF2
chr17
38733898
38749817
-
TM9SF3
chr10
96518110
96587452
-
CHD4
chr12
6570082
6614524
-
AP000350.4
chr22
23862188
23895223
+
PLCG1
chr20
41136960
41196801
+
ACTB
chr7
5527148
5563784
-
ATE1
chr10
121740421
121928801
-
TSPAN6
chrX
100627108
100639991
-
TRAF2
chr9
136881912
136926607
+
HMGN4
chr6
26538366
26546933
+
ETS2
chr21
38805183
38824955
+
LAMP5
chr20
9514358
9530524
+
MOV10
chr1
112673141
112700746
+
GLUL
chr1
182381704
182392206
-
TPM4
chr19
16067021
16103002
+
SIGIRR
chr11
405716
417455
-
HNRNPD
chr4
82352498
82374503
-
CORO7
chr16
4354542
4425705
-
ZNF319
chr16
57994668
58000453
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-432-5p
chr14
100884496
100884518
+
hsa-miR-520a-5p
chr19
53690895
53690915
+
hsa-miR-650
chr22
22822791
22822811
+
hsa-miR-330-5p
chr19
45639049
45639070
-
hsa-miR-760
chr1
93846880
93846899
+
hsa-miR-1270
chr19
20399320
20399342
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007993.3
chr17
43914433
43923001
-
AC069281.2
chr7
100572232
100578700
-
NEAT1
chr11
65422774
65445540
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA