Entry Detail


General Information

Database ID:exR0390545
RNA Name:ABT1
RNA Type:mRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):26596953End Site(bp):26600739
External Links:ENSG00000146109



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
HSP90AB1
chr6
44246166
44253888
+
RPS20
chr8
56067295
56074581
-
SLC37A4
chr11
119024114
119030906
-
PAFAH1B2
chr11
117144284
117176894
+
RNASEH2C
chr11
65714005
65720818
-
CLTA
chr9
36190856
36304781
+
USF1
chr1
161039251
161045977
-
POR
chr7
75899200
75986855
+
ENO1
chr1
8861000
8879190
-
RPL22L1
chr3
170864875
170870208
-
RAN
chr12
130872037
130877678
+
GSTP1
chr11
67583742
67586656
+
PDLIM1
chr10
95237572
95291012
-
MPDU1
chr17
7583529
7592789
+
HSPD1
chr2
197486584
197516737
-
THOC5
chr22
29505879
29555216
-
PAK1IP1
chr6
10694972
10709782
+
CHCHD10
chr22
23765834
23768443
-
DHRS4L2
chr14
23969874
24006408
+
GFOD1
chr6
13357830
13487662
-
DNAJC14
chr12
55820960
55830824
-
NFE2L1
chr17
48048329
48061545
+
SFRP1
chr8
41261962
41309473
-
B2M
chr15
44711487
44718877
+
BABAM1
chr19
17267376
17281249
+
GTPBP1
chr22
38705742
38738299
+
IL4R
chr16
27313668
27364778
+
HLA-DRA
chr6
32439878
32445046
+
MCFD2
chr2
46901870
46941855
-
EEF1A1
chr6
73515750
73523797
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-873-5p
chr9
28888925
28888945
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC008969.1
chr19
58002061
58011232
+
AC020663.1
chr16
4730115
4752565
-
MALAT1
chr11
65497688
65506516
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA