Entry Detail


General Information

Database ID:exR0390557
RNA Name:ACADM
RNA Type:mRNA
Chromosome:chr1
Starnd:+
Coordinate:
Start Site(bp):75724347End Site(bp):75787575
External Links:ENSG00000117054



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
DBN1
chr5
177456608
177474401
-
HMGA1
chr6
34236873
34246231
+
ARID5A
chr2
96536743
96552634
+
RPN2
chr20
37178410
37241619
+
HACD3
chr15
65530418
65578349
+
ITGB3BP
chr1
63440770
63593721
-
HYOU1
chr11
119044188
119057227
-
SLC35G1
chr10
93893973
93956062
+
RBMXL1
chr1
88979456
88992960
-
DTX4
chr11
59171430
59208588
+
FOXN2
chr2
48314637
48379295
+
PNN
chr14
39175183
39183220
+
BUB1B
chr15
40161023
40221136
+
DDX39B
chr6
31530219
31542448
-
GDI2
chr10
5765223
5842132
-
FTL
chr19
48965309
48966879
+
PKM
chr15
72199029
72231822
-
SRRM1
chr1
24631716
24673281
+
EXOSC8
chr13
36998816
37009614
+
DHX8
chr17
43483865
43610338
+
TRPC4
chr13
37636636
37870425
-
POLDIP3
chr22
42583721
42614962
-
RPL30
chr8
98024851
98046469
-
COA7
chr1
52684449
52698347
-
DNMT3B
chr20
32762385
32809356
+
ATP6V1G2-DDX39B
chr6
31530219
31546608
-
RPS24
chr10
78033760
78056813
+
NR1H2
chr19
50329653
50383388
+
NCOA4
chr10
46005088
46030714
-
XPO1
chr2
61477849
61538626
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004812.2
chr12
120116907
120119000
+
AC009948.2
chr2
178548884
178550681
+
AC069287.1
chr11
112967
125927
-
AL831711.1
chr1
161433444
161440996
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA