Entry Detail


General Information

Database ID:exR0444687
RNA Name:AC010522.1
RNA Type:mRNA
Chromosome:chr19
Starnd:+
Coordinate:
Start Site(bp):57819719End Site(bp):57858941
External Links:ENSG00000268750



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004076.1
chr19
57437970
57477536
-
CASC3
chr17
40140318
40172171
+
CASC4
chr15
44288719
44415758
+
DEGS1
chr1
224175756
224193441
+
DNAAF5
chr7
726699
786475
+
MAZ
chr16
29806106
29811164
+
PSMD3
chr17
39980807
39997959
+
RACK1
chr5
181236897
181248096
-
RNF40
chr16
30761745
30776307
+
SMCHD1
chr18
2655738
2805017
+
TMEM120B
chr12
121712752
121783001
+
TPD52L2
chr20
63865228
63891545
+
USHBP1
chr19
17249171
17282786
-
ZNF417
chr19
57900296
57916610
-
ZNF418
chr19
57921884
57935393
-
ZNF426
chr19
9523223
9538645
-
ZNF552
chr19
57803841
57814913
-
ZNF586
chr19
57769655
57819939
+
ZNF587
chr19
57849859
57865117
+
ZNF587B
chr19
57819721
57846238
+
ZNF671
chr19
57719751
57727624
-
ZNF749
chr19
57435325
57447101
+
ZNF772
chr19
57466663
57477570
-
ZNF776
chr19
57746815
57758148
+
ZNF814
chr19
57848731
57889074
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
NEAT1
chr11
65422774
65445540
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.