Entry Detail


General Information

Database ID:exR0444710
RNA Name:AC027644.4
RNA Type:mRNA
Chromosome:chr7
Starnd:+
Coordinate:
Start Site(bp):66628958End Site(bp):66811189
External Links:ENSG00000284461



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RPS3
chr11
75399515
75422280
+
UBE3A
chr15
25333728
25439051
-
PACS2
chr14
105300563
105398147
+
SGSM3
chr22
40370591
40410289
+
MALT1
chr18
58671465
58754477
+
TUBA1C
chr12
49188736
49274603
+
C11orf98
chr11
62662816
62665217
-
NCKAP5L
chr12
49791146
49828750
-
PKM
chr15
72199029
72231822
-
BCAS4
chr20
50794894
50882676
+
GAPDH
chr12
6534512
6538374
+
RABGEF1
chr7
66682164
66811464
+
AC008676.3
chr5
157341596
157460100
-
FTL
chr19
48965309
48966879
+
LBHD1
chr11
62662817
62672255
-
HLA-A
chr6
29941260
29945884
+
ARPC4
chr3
9792495
9807726
+
SMG7
chr1
183472216
183598246
+
NUP43
chr6
149724315
149749665
-
AICDA
chr12
8602170
8612867
-
DYNLL2
chr17
58083419
58095542
+
KCTD7
chr7
66628767
66649067
+
ABHD14B
chr3
51968510
51983409
-
ATP1A1
chr1
116372668
116410261
+
LIN28A
chr1
26410817
26429728
+
AP001458.2
chr11
62649694
62665178
-
HLA-C
chr6
31268749
31272130
-
HGS
chr17
81683326
81703138
+
UBB
chr17
16380798
16382745
+
NOLC1
chr10
102152176
102163871
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC006001.2
chr7
66654538
66671523
+
LINC00174
chr7
66376044
66493566
-
LINC01806
chr2
161244730
161249050
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.