Entry Detail


General Information

Database ID:exR0444738
RNA Name:AC116366.3
RNA Type:mRNA
Chromosome:chr5
Starnd:+
Coordinate:
Start Site(bp):132410832End Site(bp):132646079
External Links:ENSG00000283782



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
SMARCC1
chr3
47585269
47782106
-
FBL
chr19
39834458
39846379
-
CALD1
chr7
134744252
134970729
+
COX15
chr10
99711844
99732100
-
MAP3K4
chr6
160991727
161117385
+
NMT1
chr17
45051610
45109016
+
HNRNPA1L2
chr13
52642425
52643796
+
PHYKPL
chr5
178208471
178232802
-
UBE2G2
chr21
44768580
44801826
-
CKB
chr14
103519667
103522833
-
PROSER1
chr13
39009865
39038089
-
RPLP2
chr11
809965
812880
+
ERLIN1
chr10
100150094
100186033
-
CCND2
chr12
4273762
4305353
+
UBE2L3
chr22
21549447
21624034
+
IDH1
chr2
208236227
208266074
-
PPP4R2
chr3
72996803
73069198
+
TRAPPC6B
chr14
39147811
39170532
-
C8orf33
chr8
145052465
145066685
+
ACTG1
chr17
81509971
81523847
-
IQGAP3
chr1
156525405
156572604
-
AGFG1
chr2
227472152
227561214
+
OARD1
chr6
41033627
41097787
-
RCN2
chr15
76931738
76954393
+
PDHB
chr3
58427630
58433857
-
HNRNPU
chr1
244840638
244864560
-
IFITM1
chr11
313506
315272
+
CNBP
chr3
129169484
129183922
-
COPA
chr1
160288594
160343273
-
GATAD2B
chr1
153789030
153923360
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AP003068.2
chr11
65177606
65181834
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.