Entry Detail


General Information

Database ID:exR0444742
RNA Name:AC131160.1
RNA Type:mRNA
Chromosome:chr3
Starnd:-
Coordinate:
Start Site(bp):183815568End Site(bp):183884889
External Links:ENSG00000283765



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
TUBB
chr6
30720352
30725426
+
TTC23
chr15
99136323
99251223
-
ZFAND6
chr15
80059568
80138393
+
SREBF1
chr17
17810399
17837011
-
ZNF664
chr12
123971845
124015439
+
PTGFRN
chr1
116909916
116990353
+
IRX3
chr16
54283304
54286787
-
PPIF
chr10
79347469
79355334
+
PPCS
chr1
42456117
42473385
+
CCNDBP1
chr15
43185118
43197177
+
PTPN12
chr7
77537295
77640069
+
UCP2
chr11
73974672
73983246
-
CUL3
chr2
224470150
224585397
-
DCP2
chr5
112976702
113022195
+
MECP2
chrX
154021573
154137103
-
SFT2D1
chr6
166319728
166342576
-
CANX
chr5
179678628
179731641
+
SOX4
chr6
21593751
21598619
+
NSMF
chr9
137447573
137459334
-
SLC38A2
chr12
46358188
46372773
-
LIN28A
chr1
26410817
26429728
+
ABRACL
chr6
139028745
139043302
+
HILPDA
chr7
128455849
128458418
+
STAU1
chr20
49113339
49188367
-
SURF1
chr9
133351758
133356676
-
EIF3D
chr22
36510855
36529184
-
CENPF
chr1
214603195
214664571
+
EPHB4
chr7
100802565
100827523
-
TMEM134
chr11
67461710
67469272
-
CSNK1G1
chr15
64165525
64356173
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-18a-5p
chr13
91350756
91350778
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC126365.1
chr17
20788071
20789584
+
MIR17HG
chr13
91347820
91354579
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.