Entry Detail


General Information

Database ID:exR0444794
RNA Name:ACOT1
RNA Type:mRNA
Chromosome:chr14
Starnd:+
Coordinate:
Start Site(bp):73537143End Site(bp):73543796
External Links:ENSG00000184227



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABHD14B
chr3
51968510
51983409
-
ACAP2
chr3
195274745
195443044
-
ACOT2
chr14
73567620
73575658
+
ACOT4
chr14
73591706
73596496
+
ACOT6
chr14
73610945
73619888
+
B2M
chr15
44711487
44718877
+
FOXO3
chr6
108559835
108684774
+
ITPR3
chr6
33620365
33696574
+
MAPKAPK5
chr12
111842228
111902222
+
MUC4
chr3
195746765
195811973
-
PPIB
chr15
64155812
64163205
-
RAC2
chr22
37225270
37244448
-
RGS16
chr1
182598623
182604389
-
RPL13A
chr19
49487554
49492308
+
RPS20
chr8
56067295
56074581
-
TPM2
chr9
35681992
35690056
-
ZDHHC4
chr7
6577434
6589374
+
ZNF592
chr15
84748592
84806445
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC092296.2
chr19
36304564
36321274
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.