Entry Detail


General Information

Database ID:exR0444845
RNA Name:ACTR3B
RNA Type:mRNA
Chromosome:chr7
Starnd:+
Coordinate:
Start Site(bp):152759749End Site(bp):152855378
External Links:ENSG00000133627



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ASH1L
chr1
155335268
155562807
-
RPL27A
chr11
8682788
8714759
+
AC010422.3
chr19
12643831
12648397
-
CNIH4
chr1
224356858
224379459
+
GAB2
chr11
78215293
78418348
-
POU5F1
chr6
31164337
31180731
-
SPOUT1
chr9
128819651
128829794
-
RNF40
chr16
30761745
30776307
+
TRIM14
chr9
98069275
98119222
-
EEF2
chr19
3976056
3985463
-
IPO7
chr11
9384652
9448127
+
RPS12
chr6
132814569
132817564
+
TRIM26
chr6
30184455
30213427
-
SLC25A37
chr8
23528956
23575463
+
HSP90AB1
chr6
44246166
44253888
+
DAXX
chr6
33318558
33323016
-
PLS3
chrX
115561174
115650861
+
MTFR2
chr6
136231024
136250335
-
GSTK1
chr7
143244093
143270854
+
SLC39A1
chr1
153959099
153968184
-
EIF5A
chr17
7306999
7312463
+
SRSF4
chr1
29147743
29181900
-
EIF5B
chr2
99337371
99401326
+
UBR5
chr8
102252273
102412759
-
ZNF638
chr2
71276561
71435069
+
STX7
chr6
132445867
132513198
-
ALG10B
chr12
38316762
38329721
+
INCENP
chr11
62123998
62153169
+
EIF3L
chr22
37848868
37889407
+
RBBP7
chrX
16839283
16870414
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL022311.1
chr22
37876148
37895563
+
LINC00963
chr9
129476946
129513687
+
LINC01315
chr22
42364390
42369284
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.